density-fitness
Calculates per-residue electron density scores
Command lineScience
Not tested on a device yet. What that means
Commands in the package
density-fitness
About density-fitness
From Debian's package description
The program density-fitness calculates electron density metrics, for main- (includes Cβ atom) and side-chain atoms of individual residues.
For this calculation, the program uses the structure model in either PDB or mmCIF format and the electron density from the 2mFo-DFc and mFo-DFc maps. If these maps are not readily available, the MTZ file and model can be used to calculate maps clipper. Density-fitness support both X-ray and electron diffraction data.
This program is essentially a reimplementation of edstats, a program available from the CCP4 suite. However, the output now contains only the RSR, SRSR and RSCC fields as in edstats with the addition of EDIAm and OPIA and no longer requires pre-calculated map coefficients.
From Debian's description of the density-fitness package, under that package's license.
Dependencies
Depends on
libc6libcifpp7libclipper2libgcc-s1libpdb-redo3libstdc++6zlib1g
Related apps
- embossEuropean molecular biology open software suiteCommand line
- reliontoolkit for 3D reconstructions in cryo-electron microscopyCommand line
- ctffindfast and accurate defocus estimation from electron micrographsCommand line
- profbvalpredictor of flexible/rigid protein residues from sequenceCommand line
- proftmbper-residue prediction of bacterial transmembrane beta barrelsCommand line
- relion-guitoolkit for 3D reconstructions in cryo-electron microscopy (gui apps)Command line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the density-fitness package, under that package's license.
- Description: Debian's description of the density-fitness package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.