proftmb
per-residue prediction of bacterial transmembrane beta barrels
Command lineScience
Not tested on a device yet. What that means
Commands in the package
proftmb
About proftmb
From Debian's package description
proftmb predicts transmembrane beta-barrel (TMB) proteins in Gram-negative bacteria.
For each query protein, proftmb provides both a Z-value indicating that the protein actually contains a membrane barrel, and a four-state per-residue labeling of upward- and downward-facing strands, periplasmic hairpins and extracellular loops.
From Debian's description of the proftmb package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libgsl28libstdc++6
Related apps
- prodigalMicrobial (bacterial and archaeal) gene finding programCommand line
- srst2Short Read Sequence Typing for Bacterial PathogensCommand line
- density-fitnessCalculates per-residue electron density scoresCommand line
rockhopperguiSystem for analyzing bacterial RNA-seq data- profbvalpredictor of flexible/rigid protein residues from sequenceCommand line
- clonalframeinference of bacterial microevolution using multilocus sequence dataCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the proftmb package, under that package's license.
- Description: Debian's description of the proftmb package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.