profbval
predictor of flexible/rigid protein residues from sequence
Command lineScience
Not tested on a device yet. What that means
Commands in the package
profbval
About profbval
From Debian's package description
PROFbval can be useful for both protein structure and function predictions. For instance, a biologist can locate potentially antigenic determinants by identifying the most flexible residues on the protein surface. Additionally, a crystallographer can locate residues that potentially have high experimental B-values.
PROFbval takes the following input, further described on profbval(1):
- a protein sequence in a FASTA file
- secondary structure and solvent accessibility prediction by prof(1)
- an HSSP file
Background: the mobility of a given residue on the protein surface is related to its functional role. Therefore, identification of extremely rigid or flexible residues on the protein surface is helpful for identifying functionally important residues in proteins. A common measure of atom mobility in proteins is B-value data from x-ray crystallography structures. PROFbval is the first tool to predict normalized backbone B-values from amino-acid sequence.
From Debian's description of the profbval package, under that package's license.
Dependencies
Depends on
perlprofnet-bval
Recommends
blast2librg-utils-perlprofphd
Related apps
- hmmerprofile hidden Markov models for protein sequence analysisCommand line
- wisecomparison of biopolymers, like DNA and protein sequencesCommand line
- prodamultiple alignment of protein sequencesCommand line
- amap-alignProtein multiple alignment by sequence annealingCommand line
- fasttreephylogenetic trees from alignments of nucleotide or protein sequencesCommand line
- hmmer2profile hidden Markov models for protein sequence analysisCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the profbval package, under that package's license.
- Description: Debian's description of the profbval package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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