fastq-pair
Rewrites paired end fastq so all reads have a mate to separate out singletons
Command lineScience
Not tested on a device yet. What that means
Commands in the package
fastq_pair
About fastq-pair
From Debian's package description
This package rewrites the fastq files with the sequences in order, with matching files for the two files provided on the command line, and then any single reads that are not matched are place in two separate files, one for each original file.
This code is designed to be fast and memory efficient, and works with large fastq files. It does not store the whole file in memory, but rather just stores the locations of each of the indices in the first file provided in memory.
From Debian's description of the fastq-pair package, under that package's license.
Dependencies
Depends on
libc6
Related apps
- last-aligngenome-scale comparison of biological sequencesCommand line
- seergenomic sequence element (kmer) enrichment analysisCommand line
- qcatdemultiplexing Oxford Nanopore reads from FASTQ filesCommand line
- hfstHelsinki Finite-State Transducer TechnologyCommand line
- seqan-appsC++ library for the analysis of biological sequencesCommand line
- nanolyseremove lambda phage reads from a fastq fileCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the fastq-pair package, under that package's license.
- Description: Debian's description of the fastq-pair package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.