nanolyse
remove lambda phage reads from a fastq file
Command lineScience
Not tested on a device yet. What that means
Commands in the package
NanoLyse
About nanolyse
From Debian's package description
NanoLyse is a tool for rapid removal of contaminant DNA, using the Minimap2 aligner through the mappy Python binding. A typical application would be the removal of the lambda phage control DNA fragment supplied by ONT, for which the reference sequence is included in the package. However, this approach may lead to unwanted loss of reads from regions highly homologous to the lambda phage genome.
From Debian's description of the nanolyse package, under that package's license.
Dependencies
Depends on
python3-biopythonpython3-mappypython3
Related apps
- quantum-espressoElectronic-Structure and Ab-Initio Molecular Dynamics SuiteCommand line
- e00comprProgram to read/write Arcinfo compressed E00 filesCommand line
- fastaqFASTA and FASTQ file manipulation toolsCommand line
- staden-io-lib-utilsprograms for manipulating DNA sequencing filesCommand line
- qcatdemultiplexing Oxford Nanopore reads from FASTQ filesCommand line
- discosnpdiscovering Single Nucleotide Polymorphism from raw set(s) of readsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the nanolyse package, under that package's license.
- Description: Debian's description of the nanolyse package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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