ivar
functions broadly useful for viral amplicon-based sequencing
Command lineScience
Not tested on a device yet. What that means
Commands in the package
ivar
About ivar
From Debian's package description
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions:
1. trimming of primers and low-quality bases, 2. consensus calling, 3. variant calling - both iSNVs and insertions/deletions, and 4. identifying mismatches to primer sequences and excluding the corresponding reads from alignment files.
From Debian's description of the ivar package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libhts3t64libstdc++6
Recommends
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Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the ivar package, under that package's license.
- Description: Debian's description of the ivar package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.