kissplice
Detection of various kinds of polymorphisms in RNA-seq data
Command lineScience
Not tested on a device yet. What that means
Commands in the package
kissplice
About kissplice
From Debian's package description
KisSplice is a piece of software that enables the analysis of RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows one to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 1G reads. Its memory consumption is around 5Gb for 100M reads.
From Debian's description of the kissplice package, under that package's license.
Dependencies
Depends on
Related apps
- salmonwicked-fast transcript quantification from RNA-seq dataCommand line
- trinityrnaseqRNA-Seq De novo AssemblyCommand line
- discosnpdiscovering Single Nucleotide Polymorphism from raw set(s) of readsCommand line
rockhopperguiSystem for analyzing bacterial RNA-seq data- freebayesBayesian haplotype-based polymorphism discovery and genotypingCommand line
- kallistonear-optimal RNA-Seq quantificationCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the kissplice package, under that package's license.
- Description: Debian's description of the kissplice package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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