bcalm
de Bruijn compaction in low memory
Command lineScience
Not tested on a device yet. What that means
Commands in the package
bcalm
About bcalm
From Debian's package description
A bioinformatics tool for constructing the compacted de Bruijn graph from sequencing data.
This is the parallel version of the BCALM software using gatb-core library.
From Debian's description of the bcalm package, under that package's license.
Dependencies
Depends on
libc6libgatbcore3libgcc-s1libhdf5-310libstdc++6
Related apps
- idbaiterative De Bruijn Graph short read assemblersCommand line
- yanagibafilter low quality Oxford Nanopore reads basecalled with AlbacoreCommand line
- gatb-coreGenome Analysis Toolbox with de-Bruijn graphCommand line
- ncbi-segtool to mask segments of low compositional complexity in amino acid sequencesCommand line
- tantanlow complexity and tandem repeat masker for biosequencesCommand line
- twopacobuild the compacted de Bruijn graph from many complete genomesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the bcalm package, under that package's license.
- Description: Debian's description of the bcalm package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.