kleborate
tool to screen Klebsiella genome assemblies
Command lineScience
Not tested on a device yet. What that means
Commands in the package
kleborate
About kleborate
From Debian's package description
Kleborate is a tool to screen Klebsiella genome assemblies for:
- MLST sequence type
- species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
- ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb)
- virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2)
- antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations
- K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive
From Debian's description of the kleborate package, under that package's license.
Dependencies
Depends on
python3-biopythonpython3ncbi-blast+mashpython3-pkg-resourceskaptivekaptive-data
Related apps
- kaptiveobtain information about K and O types for Klebsiella genome assembliesCommand line
- surankcoSupervised Ranking of Contigs in de novo AssembliesCommand line
- rayde novo genome assemblies of next-gen sequencing dataCommand line
- skesastrategic Kmer extension for scrupulous assembliesCommand line
- tapecalcfull-screen tape editor that lets the user edit a calculationCommand line
- xplotsimple on-screen x-y column data plotterCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the kleborate package, under that package's license.
- Description: Debian's description of the kleborate package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.