skesa
strategic Kmer extension for scrupulous assemblies
Command lineScience
Not tested on a device yet. What that means
Commands in the package
skesa
About skesa
From Debian's package description
SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, and produces an identical assembly for the same input when assembled multiple times with the same or different compute resources. SKESA has been used for assembling over 272,000 read sets in the Sequence Read Archive at NCBI and for real-time pathogen detection.
From Debian's description of the skesa package, under that package's license.
Dependencies
Depends on
libboost-iostreams1.83.0libboost-program-options1.83.0libboost-timer1.83.0libc6libgcc-s1libncbi-vdb3libngs-c++3libstdc++6
Related apps
- salmidrapid Kmer based Salmonella identifier from sequence dataCommand line
- kaptiveobtain information about K and O types for Klebsiella genome assembliesCommand line
- seergenomic sequence element (kmer) enrichment analysisCommand line
- surankcoSupervised Ranking of Contigs in de novo AssembliesCommand line
- kleboratetool to screen Klebsiella genome assembliesCommand line
- spalnsplicing-aware transcript-alignment to genomic DNACommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the skesa package, under that package's license.
- Description: Debian's description of the skesa package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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