maqview
graphical read alignment viewer for short gene sequences
Command lineScience
Not tested on a device yet. What that means
Commands in the package
maqviewmaqindexmaqindex_sockszrio
About maqview
From Debian's package description
Maqview is graphical read alignment viewer. It is specifically designed for the Maq alignment file and allows you to see the mismatches, base qualities and mapping qualities. Maqview is nothing fancy as Consed or GAP, but just a simple viewer for you to see what happens in a particular region.
In comparison to tgap-maq, the text-based read alignment viewer written by James Bonfield, Maqview is faster and takes up much less memory and disk space in indexing. This is possibly because tgap aims to be a general-purpose viewer but Maqview fully makes use of the fact that a Maq alignment file has already been sorted. Maqview is also efficient in viewing and provides a command-line tool to quickly retrieve any region in an Maq alignment file.
From Debian's description of the maqview package, under that package's license.
Dependencies
Depends on
libc6libgl1libglu1-mesaorlibglu1libglut3.12libstdc++6
Related apps
- ncbi-blast+next generation suite of BLAST sequence search toolsCommand line
- bowtie2ultrafast memory-efficient short read alignerCommand line
- muscleMultiple alignment program of protein sequencesCommand line
- clustaloGeneral-purpose multiple sequence alignment program for proteinsCommand line
- mafftMultiple alignment program for amino acid or nucleotide sequencesCommand line
- bowtieUltrafast memory-efficient short read alignerCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the maqview package, under that package's license.
- Description: Debian's description of the maqview package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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