velvet-long
Nucleic acid sequence assembler for very short reads, long version
Command lineScience
Not tested on a device yet. What that means
Commands in the package
velvetg_127velvetg_127_longvelvetg_63velvetg_63_longvelvetg_longvelveth_127velveth_127_longvelveth_63velveth_63_longvelveth_long
About velvet-long
From Debian's package description
Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.
Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.
This package installs special long-mode versions of Velvet, as recommended in the Velvet tutorials.
From Debian's description of the velvet-long package, under that package's license.
Dependencies
Depends on
libc6libgomp1zlib1gvelvet
Related apps
- velvetNucleic acid sequence assembler for very short readsCommand line
- prankProbabilistic Alignment Kit for DNA, codon and amino-acid sequencesCommand line
- macsModel-based Analysis of ChIP-Seq on short reads sequencersCommand line
- bbmapBBTools genomic aligner and other tools for short sequencesCommand line
- idbaiterative De Bruijn Graph short read assemblersCommand line
- flyede novo assembler for single molecule sequencing reads using repeat graphsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the velvet-long package, under that package's license.
- Description: Debian's description of the velvet-long package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.