metaeuk
sensitive, high-throughput gene discovery and annotation for metagenomics
Command lineScience
Not tested on a device yet. What that means
Commands in the package
metaeuk
About metaeuk
From Debian's package description
MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs. MetaEuk combines the fast and sensitive homology search capabilities of MMseqs2 with a dynamic programming procedure to recover optimal exons sets. It reduces redundancies in multiple discoveries of the same gene and resolves conflicting gene predictions on the same strand.
From Debian's description of the metaeuk package, under that package's license.
Dependencies
Depends on
libatomic1libbz2-1.0libc6libgcc-s1libgomp1libstdc++6
Related apps
- cutadaptClean biological sequences from high-throughput sequencing readsCommand line
- mmseqs2ultra fast and sensitive protein search and clusteringCommand line
- vsearchtool for processing metagenomic sequencesCommand line
- atroposNGS read trimming tool that is specific, sensitive, and speedyCommand line
- microbegpsexplorative taxonomic profiling tool for metagenomic dataCommand line
- berkeley-expressStreaming quantification for high-throughput sequencingCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the metaeuk package, under that package's license.
- Description: Debian's description of the metaeuk package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.