microbegps
explorative taxonomic profiling tool for metagenomic data
Command lineScience
Not tested on a device yet. What that means
Commands in the package
MicrobeGPS
About microbegps
From Debian's package description
MicrobeGPS is a bioinformatics tool for the analysis of metagenomic sequencing data. The goal is to profile the composition of metagenomic communities as accurately as possible and present the results to the user in a convenient manner. One main focus is reliability: the tool calculates quality metrics for the estimated candidates and allows the user to identify false candidates easily.
From Debian's description of the microbegps package, under that package's license.
Dependencies
Depends on
python3-matplotlibpython3-matplotlib-vennpython3-numpypython3-scipypython3python3-pyqt5
Related apps
- metaphlanMetagenomic Phylogenetic AnalysisCommand line
- graphlancircular representations of taxonomic and phylogenetic treesCommand line
- lefsedetermine features of organisms, clades, taxonomic units, genesCommand line
- cat-battaxonomic classification of contigs and metagenome-assembled genomes (MAGs)Command line
- kraken2taxonomic classification system using exact k-mer matchesCommand line
- vsearchtool for processing metagenomic sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the microbegps package, under that package's license.
- Description: Debian's description of the microbegps package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.