metastudent
predictor of Gene Ontology terms from protein sequence
Command lineScience
Not tested on a device yet. What that means
Commands in the package
metastudent
About metastudent
From Debian's package description
Often, only the sequence of a protein is known, but not its functions. Metastudent will try to predict missing functional annotations through homology searches (BLAST).
All predicted functions correspond to Gene Ontology (GO) terms from the Molecular Function (MFO), the Biological Process (BPO) and the Cellular Component Ontology (CCO) and are associated with a reliability score.
From Debian's description of the metastudent package, under that package's license.
Dependencies
Depends on
perlpython3python3ncbi-blast+-legacydefault-jrelibgo-perllibipc-run-perllibgraphviz-perllibfile-chdir-perlmetastudent-data
Related apps
- snaplocation of genes from DNA sequence with hidden markov modelCommand line
- ncbi-blast+next generation suite of BLAST sequence search toolsCommand line
- hmmerprofile hidden Markov models for protein sequence analysisCommand line
- muscleMultiple alignment program of protein sequencesCommand line
- clustaloGeneral-purpose multiple sequence alignment program for proteinsCommand line
- ncbi-entrez-directNCBI Entrez utilities on the command lineCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the metastudent package, under that package's license.
- Description: Debian's description of the metastudent package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.