nanopolish

consensus caller for nanopore sequencing data

Command lineScience

Not tested on a device yet. What that means

Commands in the package

nanopolish
nanopolish_makerange

About nanopolish

From Debian's package description

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

From Debian's description of the nanopolish package, under that package's license.

Dependencies

Depends on

libc6
libgcc-s1
libgomp1
libhdf5-310
libhts3t64
libslow5-0t64
libstdc++6
libstreamvbyte0
zlib1g
python3
perl

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python3-pysam

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bitseqBayesian Inference of Transcripts from Sequencing DataCommand line
dazzdbmanage nucleotide sequencing read dataCommand line

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Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the nanopolish package, under that package's license.
Description: Debian's description of the nanopolish package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.