gbrowse

GMOD Generic Genome Browser

Command lineScience

Not tested on a device yet. What that means

Commands in the package

bed2gff3
gbrowse_aws_balancer
gbrowse_change_passwd
gbrowse_clean
gbrowse_configure_slaves
gbrowse_create_account
gbrowse_grow_cloud_vol
gbrowse_import_ucsc_db
gbrowse_metadb_config
gbrowse_set_admin_passwd
gbrowse_slave
gbrowse_syn_load_alignment_database
gbrowse_syn_load_alignments_msa
gbrowse_sync_aws_slave
gtf2gff3
load_genbank
make_das_conf
scan_gbrowse
ucsc_genes2gff
wiggle2gff3

About gbrowse

From Debian's package description

Generic Genome Browser is a simple but highly configurable web-based genome browser. It is a component of the Generic Model Organism Systems Database project (GMOD). Some of its features:
Simultaneous bird's eye and detailed views of the genome;
Scroll, zoom, center;
Attach arbitrary URLs to any annotation;
Order and appearance of tracks are customizable by administrator and end-user;
Search by annotation ID, name, or comment;
Supports third party annotation using GFF formats;
Settings persist across sessions;
DNA and GFF dumps;
Connectivity to different databases, including BioSQL and Chado;
Multi-language support;
Third-party feature loading;
Customizable plug-in architecture (e.g. run BLAST, dump & import many formats, find oligonucleotides, design primers, create restriction maps, edit features).

From Debian's description of the gbrowse package, under that package's license.

Dependencies

Depends on

perl
apache2orhttpd-cgi
bioperl
libbio-graphics-perl
libbio-coordinate-perl
libbio-db-seqfeature-perl
libcgi-session-perl
libgd-gd2-noxpm-perlorlibgd-gd2-perl
libio-string-perl
libjson-perl
libstatistics-descriptive-perl
libwww-perl
libhttp-daemon-perl
libterm-readkey-perl
sqlite3
libdbd-sqlite3-perl
libjs-prototype
libjs-scriptaculous
libvm-ec2-perl

Recommends

apache2orhttpd

Related apps

gdal-binGeospatial Data Abstraction Library - Utility programsCommand line
condordistributed workload management systemCommand line
mummerEfficient sequence alignment of full genomesCommand line
fsaFast Statistical Alignment of protein, RNA or DNA sequencesCommand line
mbpollcommand line utility to communicate with ModBus slave (RTU or TCP)Command line
science-configDebian Science Project config packageCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the gbrowse package, under that package's license.
Description: Debian's description of the gbrowse package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.