mira-assembler
Whole Genome Shotgun and EST Sequence Assembler
Command lineScience
Not tested on a device yet. What that means
Commands in the package
miramirabaitmiraconvertmiramemmiramer
About mira-assembler
From Debian's package description
The mira genome fragment assembler is a specialised assembler for sequencing projects classified as 'hard' due to high number of similar repeats. For expressed sequence tags (ESTs) transcripts, miraEST is specialised on reconstructing pristine mRNA transcripts while detecting and classifying single nucleotide polymorphisms (SNP) occurring in different variations thereof.
The assembler is routinely used for such various tasks as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments.
The package provides the following executables: Binaries provided:
- mira: for assembly of genome sequences
- miramem: estimating memory needed to assemble projects.
- mirabait: a "grep" like tool to select reads with kmers up to 256 bases.
- miraconvert: is a tool to convert, extract and sometimes recalculate all kinds of data related to sequence assembly files.
From Debian's description of the mira-assembler package, under that package's license.
Dependencies
Depends on
libboost-filesystem1.83.0libboost-thread1.83.0libc6libexpat1libgcc-s1libgomp1libstdc++6zlib1g
Recommends
mira-rfam-12s-rrna
Related apps
- plinkwhole-genome association analysis toolsetCommand line
- laganhighly parametrizable pairwise global genome sequence alignerCommand line
- sim4dbbatch spliced alignment of cDNA sequences to a target genomeCommand line
- cd-hitsuite of programs designed to quickly group sequencesCommand line
- velvetNucleic acid sequence assembler for very short readsCommand line
- last-aligngenome-scale comparison of biological sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the mira-assembler package, under that package's license.
- Description: Debian's description of the mira-assembler package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.