vt
toolset for short variant discovery in genetic sequence data
Command lineScience
Not tested on a device yet. What that means
Commands in the package
vt
About vt
From Debian's package description
vt is a variant tool set that discovers short variants from Next Generation Sequencing data.
Vt-normalize is a tool to normalize representation of genetic variants in the VCF. Variant normalization is formally defined as the consistent representation of genetic variants in an unambiguous and concise way. In vt a simple general algorithm to enforce this is implemented.
From Debian's description of the vt package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libhts3t64libpcre2-8-0libstdc++6r-base-core
Related apps
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- bbmapBBTools genomic aligner and other tools for short sequencesCommand line
- velvetNucleic acid sequence assembler for very short readsCommand line
- maqmaps short fixed-length polymorphic DNA sequence reads to reference sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the vt package, under that package's license.
- Description: Debian's description of the vt package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.