plink2
whole-genome association analysis toolset
Command lineScience
Not tested on a device yet. What that means
Commands in the package
plink2pgen_compress
About plink2
From Debian's package description
plink expects as input the data from SNP (single nucleotide polymorphism) chips of many individuals and their phenotypical description of a disease. It finds associations of single or pairs of DNA variations with a phenotype and can retrieve SNP annotation from an online source.
SNPs can evaluated individually or as pairs for their association with the disease phenotypes. The joint investigation of copy number variations is supported. A variety of statistical tests have been implemented.
plink2 is a comprehensive update of plink and plink1.9 with new algorithms and new methods, faster and less memory consumer than the first plink.
From Debian's description of the plink2 package, under that package's license.
Dependencies
Depends on
libblas3orlibblas.so.3libc6libdeflate0liblapack3orliblapack.so.3libzstd1zlib1g
Related apps
- plinkwhole-genome association analysis toolsetCommand line
- roaryhigh speed stand alone pan genome pipelineCommand line
- ont-fast5-apisimple interface to HDF5 files of the Oxford Nanopore .fast5 file formatCommand line
- aegeanintegrated genome analysis toolkitCommand line
- seqan-appsC++ library for the analysis of biological sequencesCommand line
- genometoolsversatile genome analysis toolkitCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the plink2 package, under that package's license.
- Description: Debian's description of the plink2 package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.