porechop
adapter trimmer for Oxford Nanopore reads
Command lineScience
Not tested on a device yet. What that means
Commands in the package
porechop
About porechop
From Debian's package description
Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity. Porechop also supports demultiplexing of Nanopore reads that were barcoded with the Native Barcoding Kit, PCR Barcoding Kit or Rapid Barcoding Kit.
From Debian's description of the porechop package, under that package's license.
Dependencies
Depends on
Related apps
- ont-fast5-apisimple interface to HDF5 files of the Oxford Nanopore .fast5 file formatCommand line
- qcatdemultiplexing Oxford Nanopore reads from FASTQ filesCommand line
- trim-galoreautomate quality and adapter trimming for DNA sequencingCommand line
- yanagibafilter low quality Oxford Nanopore reads basecalled with AlbacoreCommand line
- yanosimread simulator nanopore DRS datasetsCommand line
- mcallerfind methylation in nanopore readsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the porechop package, under that package's license.
- Description: Debian's description of the porechop package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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