mcaller
find methylation in nanopore reads
Command lineScience
Not tested on a device yet. What that means
Commands in the package
mCallercompare_genomesmake_bed
About mcaller
From Debian's package description
H | H-C-aller | H
This program is designed to call m6A from nanopore data using the differences between measured and expected currents.
From Debian's description of the mcaller package, under that package's license.
Dependencies
Depends on
python3python3-sklearnpython3-h5pypython3-biopythonpython3-matplotlibpython3-seabornpython3-numpypython3-pysampython3-scipypython3-pandas
Recommends
Related apps
- gbrowseGMOD Generic Genome BrowserCommand line
- vcftoolsCollection of tools to work with VCF filesCommand line
- coqproof assistant for higher-order logic (toplevel and compiler)Command line
- bioperlPerl tools for computational molecular biologyCommand line
- hisat2graph-based alignment of short nucleotide reads to many genomesCommand line
- bedopshigh-performance genomic feature operationsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the mcaller package, under that package's license.
- Description: Debian's description of the mcaller package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.