poretools
toolkit for nanopore nucleotide sequencing data
Command lineScience
Not tested on a device yet. What that means
Commands in the package
poretools
About poretools
From Debian's package description
poretools is a flexible toolkit for exploring datasets generated by nanopore sequencing devices from MinION for the purposes of quality control and downstream analysis. Poretools operates directly on the native FAST5 (a variant of the HDF5 standard) file format produced by ONT and provides a wealth of format conversion utilities and data exploration and visualization tools.
From Debian's description of the poretools package, under that package's license.
Dependencies
Depends on
python3-h5pypython3-matplotlibpython3-pandaspython3-seabornpython3
Related apps
- ea-utilscommand-line tools for processing biological sequencing dataCommand line
- subreadtoolkit for processing next-gen sequencing dataCommand line
- bitseqBayesian Inference of Transcripts from Sequencing DataCommand line
- dazzdbmanage nucleotide sequencing read dataCommand line
- dalignerlocal alignment discovery between long nucleotide sequencing readsCommand line
- nanopolishconsensus caller for nanopore sequencing dataCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the poretools package, under that package's license.
- Description: Debian's description of the poretools package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.