probalign
multiple sequence alignment using partition function posterior probabilities
Command lineScience
Not tested on a device yet. What that means
Commands in the package
probalign
About probalign
From Debian's package description
Probalign uses partition function posterior probability estimates to compute maximum expected accuracy multiple sequence alignments. It performs statistically significantly better than the leading alignment programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0, HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on datasets containing N/C terminal extensions and on datasets with long and heterogeneous length sequences. On heteregeneous length datasets containing repeats Probalign alignment accuracy is 10% and 15% higher than the other three methods when standard deviation of length is at least 300 and 400.
From Debian's description of the probalign package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6
Related apps
- samtoolsprocessing sequence alignments in SAM, BAM and CRAM formatsCommand line
- muscleMultiple alignment program of protein sequencesCommand line
- clustaloGeneral-purpose multiple sequence alignment program for proteinsCommand line
- mafftMultiple alignment program for amino acid or nucleotide sequencesCommand line
SeaViewEdits multiple sequence alignments and prints them in PostScript format.- kalignGlobal and progressive multiple sequence alignmentCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the probalign package, under that package's license.
- Description: Debian's description of the probalign package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.