pyensembl
installs data from the Ensembl genome database
Command lineScience
Not tested on a device yet. What that means
Commands in the package
pyensembl
About pyensembl
From Debian's package description
The Ensembl genome database is an established reference for genomic sequences and their automated annotation. To have this data local has advantages for bulk analyses, e.g. for the mapping of reads from RNA-seq against the latest golden path - or a previous one to compare analyses.
This package provides a reproducible way to insatll this data and thus simplify the automation of respective workflows.
From Debian's description of the pyensembl package, under that package's license.
Dependencies
Depends on
Related apps
- gbrowseGMOD Generic Genome BrowserCommand line
- rayde novo genome assemblies of next-gen sequencing dataCommand line
- pinfishCollection of tools to annotate genomes using long read transcriptomics dataCommand line
- plinkwhole-genome association analysis toolsetCommand line
igvdesktop genome vizualisation tool- hisat2graph-based alignment of short nucleotide reads to many genomesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the pyensembl package, under that package's license.
- Description: Debian's description of the pyensembl package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.