resfinder
identify acquired antimicrobial resistance genes
Command lineScience
Not tested on a device yet. What that means
Commands in the package
run_resfinder.py
About resfinder
From Debian's package description
ResFinder identifies acquired antimicrobial resistance genes in total or partial sequenced isolates of bacteria.
ResFinder that uses BLAST for identification of acquired antimicrobial resistance genes in whole-genome data. As input, the method can use both pre-assembled, complete or partial genomes, and short sequence reads from four different sequencing platforms. The method was evaluated on 1862 GenBank files containing 1411 different resistance genes, as well as on 23 de-novo-sequenced isolates.
From Debian's description of the resfinder package, under that package's license.
Dependencies
Depends on
python3resfinder-dbpython3-cgecorepython3-tabulatencbi-blast+-legacykmapython3-gitpython3-dateutilpython3-cgelib
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Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the resfinder package, under that package's license.
- Description: Debian's description of the resfinder package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.