estscan

ORF-independent detector of coding DNA sequences

Command lineScience

Not tested on a device yet. What that means

Commands in the package

estscan
evaluate_model
extract_EST
extract_UG_EST
makesmat
maskred
prepare_data
winsegshuffle

About estscan

From Debian's package description

ESTScan is a program that can detect coding regions in DNA sequences, even if they are of low quality. ESTScan will also detect and correct sequencing errors that lead to frameshifts. ESTScan is not a gene prediction program , nor is it an open reading frame detector. In fact, its strength lies in the fact that it does not require an open reading frame to detect a coding region. As a result, the program may miss a few translated amino acids at either the N or the C terminus, but will detect coding regions with high selectivity and sensitivity.
ESTScan takes advantages of the bias in hexanucleotide usage found in coding regions relative to non-coding regions. This bias is formalized as an inhomogeneous 3-periodic fifth-order Hidden Markov Model (HMM). Additionally, the HMM of ESTScan has been extended to allows insertions and deletions when these improve the coding region statistics.

From Debian's description of the estscan package, under that package's license.

Dependencies

Depends on

libc6
libgfortran5
perl

Related apps

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the estscan package, under that package's license.
Description: Debian's description of the estscan package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.