samblaster
marks duplicates, extracts discordant/split reads
Command lineScience
Not tested on a device yet. What that means
Commands in the package
samblaster
About samblaster
From Debian's package description
Current "next-generation" sequencing technologies cannot tell what exact sequence they will be reading. They take what is available. And if some sequences are read very often, then this needs some extra biomedical thinking. The genome could for instance be duplicated.
samblaster is a fast and flexible program for marking duplicates in read-id grouped paired-end SAM files. It can also optionally output discordant read pairs and/or split read mappings to separate SAM files, and/or unmapped/clipped reads to a separate FASTQ file. When marking duplicates, samblaster will require approximately 20MB of memory per 1M read pairs.
From Debian's description of the samblaster package, under that package's license.
Dependencies
Depends on
libc6libstdc++6
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Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the samblaster package, under that package's license.
- Description: Debian's description of the samblaster package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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