yaha
find split-read mappings on single-end queries
Command lineScience
Not tested on a device yet. What that means
Commands in the package
yaha
About yaha
From Debian's package description
yaha is an open source, flexible, sensitive and accurate DNA aligner designed for single-end reads. It supports three major modes of operation:
- The default “Optimal Query Coverage” (-OQC) mode reports the best set of alignments that cover the length of each query.
- Using “Filter By Similarity” (-FBS), along with the best set of alignments, yaha will also output alignments that are highly similar to an alignment in the best set.
- Finally, yaha can output all the alignments found for each query.
The -OQC and -FBS modes are specifically tuned to form split read mappings that can be used to accurately identify structural variation events (deletions, duplications, insertions or inversions) between the subject query and the reference genome.
From Debian's description of the yaha package, under that package's license.
Dependencies
Depends on
libc6
Related apps
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- kmamapping genomic sequences to raw reads directly against redundant databasesCommand line
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- discosnpdiscovering Single Nucleotide Polymorphism from raw set(s) of readsCommand line
- dnarrangeMethod to find rearrangements in long DNA reads relative to a genome seqCommand line
- mcallerfind methylation in nanopore readsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the yaha package, under that package's license.
- Description: Debian's description of the yaha package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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