seqprep
stripping adaptors and/or merging paired reads of DNA sequences with overlap
Command lineScience
Not tested on a device yet. What that means
Commands in the package
seqprep
About seqprep
From Debian's package description
SeqPrep is a program to merge paired end Illumina reads that are overlapping into a single longer read. It may also just be used for its adapter trimming feature without doing any paired end overlap. When an adapter sequence is present, that means that the two reads must overlap (in most cases) so they are forcefully merged. When reads do not have adapter sequence they must be treated with care when doing the merging, so a much more specific approach is taken. The default parameters were chosen with specificity in mind, so that they could be ran on libraries where very few reads are expected to overlap. It is always safest though to save the overlapping procedure for libraries where you have some prior knowledge that a significant portion of the reads will have some overlap.
From Debian's description of the seqprep package, under that package's license.
Dependencies
Depends on
libc6zlib1g
Related apps
- wisecomparison of biopolymers, like DNA and protein sequencesCommand line
- prankProbabilistic Alignment Kit for DNA, codon and amino-acid sequencesCommand line
- cutadaptClean biological sequences from high-throughput sequencing readsCommand line
- dascrubberalignment-based scrubbing pipeline for DNA sequencing readsCommand line
- mapdamagetracking and quantifying damage patterns in ancient DNA sequencesCommand line
- ragoutReference-Assisted Genome Ordering UTilityCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the seqprep package, under that package's license.
- Description: Debian's description of the seqprep package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.