smithwaterman
determine similar regions between two strings or genomic sequences
Command lineScience
Not tested on a device yet. What that means
Commands in the package
smithwaterman
About smithwaterman
From Debian's package description
The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure.
From Debian's description of the smithwaterman package, under that package's license.
Dependencies
Depends on
libc6libdisorder0libgcc-s1libsmithwaterman0libstdc++6
Related apps
- FastQC quality controlquality control for high throughput sequence data
- minimap2versatile pairwise aligner for genomic and spliced nucleotide sequencesCommand line
- bbmapBBTools genomic aligner and other tools for short sequencesCommand line
- lefsedetermine features of organisms, clades, taxonomic units, genesCommand line
- gffreadGFF/GTF format conversions, region filtering, FASTA sequence extractionCommand line
- seergenomic sequence element (kmer) enrichment analysisCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the smithwaterman package, under that package's license.
- Description: Debian's description of the smithwaterman package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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