ssw-align
Smith-Waterman aligner based on libssw
Command lineScience
Not tested on a device yet. What that means
Commands in the package
ssw-alignssw_test
About ssw-align
From Debian's package description
This package provides a command-line aligner based on the libssw library, a fast SIMD accelerated implementation of the Smith-Waterman algorithm. The input files can be in FASTA or FASTQ format. Both target and query files can contain multiple sequences. Each sequence in the query file will be aligned with all sequences in the target file. Output is provided in SAM or BLAST-like text format.
From Debian's description of the ssw-align package, under that package's license.
Dependencies
Depends on
libc6zlib1glibssw0
Related apps
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- bowtie2ultrafast memory-efficient short read alignerCommand line
- bowtieUltrafast memory-efficient short read alignerCommand line
- hisat2graph-based alignment of short nucleotide reads to many genomesCommand line
- subreadtoolkit for processing next-gen sequencing dataCommand line
- ismrmrd-toolscommand-line tools for ISMRMRDCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the ssw-align package, under that package's license.
- Description: Debian's description of the ssw-align package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.