svim
Structural variant caller for long sequencing reads
Command lineScience
Not tested on a device yet. What that means
Commands in the package
svim
About svim
From Debian's package description
SVIM is a structural variant caller for long sequencing reads. It is able to detect, classify and genotype five different classes of structural variants. Unlike existing methods, SVIM integrates information from across the genome to precisely distinguish similar events, such as tandem and interspersed duplications and simple insertions.
From Debian's description of the svim package, under that package's license.
Dependencies
Depends on
python3-cpuinfopython3-edlibpython3-matplotlibpython3-numpypython3-pysampython3-pyspoapython3-scipypython3
Related apps
- cutadaptClean biological sequences from high-throughput sequencing readsCommand line
- dascrubberalignment-based scrubbing pipeline for DNA sequencing readsCommand line
- dazzdbmanage nucleotide sequencing read dataCommand line
- flyede novo assembler for single molecule sequencing reads using repeat graphsCommand line
- cnvkitCopy number variant detection from targeted DNA sequencingCommand line
- raconconsensus module for raw de novo DNA assembly of long uncorrected readsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the svim package, under that package's license.
- Description: Debian's description of the svim package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.