tantan
low complexity and tandem repeat masker for biosequences
Command lineScience
Not tested on a device yet. What that means
Commands in the package
tantan
About tantan
From Debian's package description
tantan is a tool to mask simple regions (low complexity and short-period tandem repeats) in DNA, RNA, and protein sequences. The aim of tantan is to prevent false predictions when searching for homologous regions between two sequences. Simple repeats often align strongly to each other, causing false homology predictions.
From Debian's description of the tantan package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6zlib1g
Related apps
- tandem-massmass spectrometry software for protein identificationCommand line
- yanagibafilter low quality Oxford Nanopore reads basecalled with AlbacoreCommand line
- minimaptool for approximate mapping of long biosequences such as DNA readsCommand line
- trflocate and display tandem repeats in DNA sequencesCommand line
- ncbi-segtool to mask segments of low compositional complexity in amino acid sequencesCommand line
- bcalmde Bruijn compaction in low memoryCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the tantan package, under that package's license.
- Description: Debian's description of the tantan package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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