minimap
tool for approximate mapping of long biosequences such as DNA reads
Command lineScience
Not tested on a device yet. What that means
Commands in the package
minimap
About minimap
From Debian's package description
Minimap is an experimental tool to efficiently find multiple approximate mapping positions between two sets of long biological sequences, such as between DNA reads and reference genomes, between genomes and between long noisy reads. Minimap does not generate alignments as of now and because of this, it is usually tens of times faster than mainstream aligners. It does not replace mainstream aligners, but it can be useful when you want to quickly identify long approximate matches at moderate divergence among a huge collection of sequences. For this task, it is much faster than most existing tools.
From Debian's description of the minimap package, under that package's license.
Dependencies
Depends on
libc6zlib1g
Related apps
V_SimV_Sim visualizes atomic structures such as crystals, grain boundaries, molecules and so on.- dascrubberalignment-based scrubbing pipeline for DNA sequencing readsCommand line
- maqmaps short fixed-length polymorphic DNA sequence reads to reference sequencesCommand line
- raconconsensus module for raw de novo DNA assembly of long uncorrected readsCommand line
- kmamapping genomic sequences to raw reads directly against redundant databasesCommand line
- dalignerlocal alignment discovery between long nucleotide sequencing readsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the minimap package, under that package's license.
- Description: Debian's description of the minimap package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.