thesias
Testing Haplotype Effects In Association Studies
Command lineScience
Not tested on a device yet. What that means
Commands in the package
THESIAS
About thesias
From Debian's package description
The objectif of the THESIAS program is to performed haplotype-based association analysis in unrelated individuals. This program is based on the maximum likelihood model described in Tregouet et al. 2002 (Hum Mol Genet 2002,11: 2015-2023) and is linked to the SEM algorithm (Tregouet et al. Ann Hum Genet 2004,68: 165-177). THESIAS allows one to simultaneous estimate haplotype frequencies and their associate effects on the phenotype of interest. In this new THESIAS release, quantitative, qualitative (logistic and matched-pair analysis), categorical and survival outcomes can be studied. X-linked haplotype analysis is also feasible. Covariate-adjusted haplotype effects as well as haplotype x covariate interactions can also be investigated.
From Debian's description of the thesias package, under that package's license.
Dependencies
Depends on
libc6default-jre
Related apps
- ScoaryPangenome-wide association studies
- freebayesBayesian haplotype-based polymorphism discovery and genotypingCommand line
- swarmrobust and fast clustering method for amplicon-based studiesCommand line
- piquesoftware pipeline for performing genome wide association studiesCommand line
- shapeit4fast and accurate method for estimation of haplotypes (phasing)Command line
- plinkwhole-genome association analysis toolsetCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the thesias package, under that package's license.
- Description: Debian's description of the thesias package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.