transtermhp
find rho-independent transcription terminators in bacterial genomes
Command lineScience
Not tested on a device yet. What that means
Commands in the package
2ndscoretransterm
About transtermhp
From Debian's package description
TransTermHP finds rho-independent transcription terminators in bacterial genomes. Each terminator found by the program is assigned a confidence value that estimates its probability of being a true terminator. TransTermHP is the successor of TransTerm which was using very different search and scoring algorithms.
From Debian's description of the transtermhp package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6
Related apps
- pscan-tfbssearch for transcription factor binding sitesCommand line
- prodigalMicrobial (bacterial and archaeal) gene finding programCommand line
- estscanORF-independent detector of coding DNA sequencesCommand line
- dnarrangeMethod to find rearrangements in long DNA reads relative to a genome seqCommand line
- srst2Short Read Sequence Typing for Bacterial PathogensCommand line
rockhopperguiSystem for analyzing bacterial RNA-seq data
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the transtermhp package, under that package's license.
- Description: Debian's description of the transtermhp package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.