twopaco
build the compacted de Bruijn graph from many complete genomes
Command lineScience
Not tested on a device yet. What that means
Commands in the package
twopacographdump
About twopaco
From Debian's package description
TwoPaCo is an implementation of the algorithm described in the paper "TwoPaCo: An efficient algorithm to build the compacted de Bruijn graph from many complete genomes".
This package contains two programs:
twopaco: tool for direct construction of the compressed graph from multiple complete genomes graphdump: utility that turns output of twopaco into a text format
From Debian's description of the twopaco package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6libtbb12libtbbmalloc2
Related apps
- idbaiterative De Bruijn Graph short read assemblersCommand line
- seqan-appsC++ library for the analysis of biological sequencesCommand line
- gatb-coreGenome Analysis Toolbox with de-Bruijn graphCommand line
- sgade novo genome assembler that uses string graphsCommand line
- bcalmde Bruijn compaction in low memoryCommand line
- cctvisually comparing bacterial, plasmid, chloroplast, or mitochondrial sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the twopaco package, under that package's license.
- Description: Debian's description of the twopaco package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.