aevol

digital genetics model to run Evolution Experiments in silico

Command lineScience

Not tested on a device yet. What that means

Commands in the package

aevol_create
aevol_misc_ancestor_robustness
aevol_misc_ancestor_stats
aevol_misc_create_eps
aevol_misc_extract
aevol_misc_lineage
aevol_misc_mutagenesis
aevol_misc_robustness
aevol_misc_view
aevol_modify
aevol_propagate
aevol_run

About aevol

From Debian's package description

Aevol is a digital genetics model: populations of digital organisms are subjected to a process of selection and variation, which creates a Darwinian dynamics.
By modifying the characteristics of selection (e.g. population size, type of environment, environmental variations) or variation (e.g. mutation rates, chromosomal rearrangement rates, types of rearrangements, horizontal transfer), one can study experimentally the impact of these parameters on the structure of the evolved organisms. In particular, since Aevol integrates a precise and realistic model of the genome, it allows for the study of structural variations of the genome (e.g. number of genes, synteny, proportion of coding sequences).
The simulation platform comes along with a set of tools for analysing phylogenies and measuring many characteristics of the organisms and populations along evolution.

From Debian's description of the aevol package, under that package's license.

Dependencies

Depends on

libboost-filesystem1.83.0
libc6
libgcc-s1
libgomp1
libstdc++6
libx11-6
zlib1g

Related apps

gbrowseGMOD Generic Genome BrowserCommand line
ea-utilscommand-line tools for processing biological sequencing dataCommand line
bcftoolsgenomic variant calling and manipulation of VCF/BCF filesCommand line
vcftoolsCollection of tools to work with VCF filesCommand line
bioperlPerl tools for computational molecular biologyCommand line
conda-package-handlingcreate and extract conda packages of various formatsCommand line

All Linux science apps

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the aevol package, under that package's license.
Description: Debian's description of the aevol package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.