assembly-stats
get assembly statistics from FASTA and FASTQ files
Command lineScience
Not tested on a device yet. What that means
Commands in the package
assembly-stats
About assembly-stats
From Debian's package description
Get statistics from a list of files.
Detection of FASTA or FASTQ format of each file is automatic from the file contents, so file names and extensions are irrelevant.
The default output format is human readable. You can change the output format and ignore sequences shorter than a given length.
From Debian's description of the assembly-stats package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6
Related apps
- vcftoolsCollection of tools to work with VCF filesCommand line
- gfanprogram for computing with Groebner fansCommand line
- seqkitcross-platform and ultrafast toolkit for FASTA/Q file manipulationCommand line
- fastaqFASTA and FASTQ file manipulation toolsCommand line
- seqtkFast and lightweight tool for processing sequences in the FASTA or FASTQ formatCommand line
- hhsuitesensitive protein sequence searching based on HMM-HMM alignmentCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the assembly-stats package, under that package's license.
- Description: Debian's description of the assembly-stats package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.