augur
pipeline components for real-time virus analysis
Command lineScience
Not tested on a device yet. What that means
Commands in the package
augur
About augur
From Debian's package description
The nextstrain project is an attempt to make flexible informatic pipelines and visualization tools to track ongoing pathogen evolution as sequence data emerges. The nextstrain project derives from nextflu, which was specific to influenza evolution.
nextstrain is comprised of three components:
- fauna: database and IO scripts for sequence and serological data
- augur: informatic pipelines to conduct inferences from raw data
- auspice: web app to visualize resulting inferences
From Debian's description of the augur package, under that package's license.
Dependencies
Depends on
python3-bcbio-gffpython3-biopythonpython3-cvxoptpython3-importlib-resourcesorpython3-supported-minpython3-isodatepython3-jsonschemapython3-networkxpython3-numpypython3-packagingpython3-pandaspython3-pyfastxpython3-scipypython3-treetimepython3-xopenpython3python3-boto3python3-dendropypython3-matplotlibpython3-schedulepython3-seabornpython3-zstandardseqmagickpython3-ipdbmafftraxmlfasttreevcftools
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Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the augur package, under that package's license.
- Description: Debian's description of the augur package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.