bio-tradis

analyse the output from TraDIS analyses of genomic sequences

Not tested on a device yet. What that means

Commands in the package

add_tradis_tags
bacteria_tradis
check_tradis_tags
combine_tradis_plots
filter_tradis_tags
remove_tradis_tags
tradis_comparison
tradis_essentiality
tradis_gene_insert_sites
tradis_merge_plots
tradis_plot

About bio-tradis

From Debian's package description

Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses.
The Bio-Tradis analysis pipeline is implemented as an extensible Perl library which can either be used as is, or as a basis for the development of more advanced analysis tools.
Please note: You need to manually install BioConductor Edger which can not be distributed by Debian in recent version since it is using non-distributable code locfit.

From Debian's description of the bio-tradis package, under that package's license.

Dependencies

Depends on

perl
libbio-perl-perl
libexception-class-perl
libmoose-perl
libtext-csv-perl
libtry-tiny-perl
smalt
samtools
tabix
r-base-core
r-cran-getopt
r-cran-mass

Recommends

artemis
r-bioc-edger

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All Linux development tools

Sources and licenses

Name: the Debian package name.
Summary: Debian's short description of the bio-tradis package, under that package's license.
Description: Debian's description of the bio-tradis package, under that package's license.
Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
Popularity: Debian Popularity Contest counts.