clonalorigin
inference of homologous recombination in bacteria using whole genome sequences
Command lineScience
Not tested on a device yet. What that means
Commands in the package
clonaloriginblocksplitcomputeMediansmakeMauveWargFilewarg
About clonalorigin
From Debian's package description
Bacteria, unlike us, can reproduce on their own. They do however have mechanisms that transfer DNA between organisms, a process more formally known as recombination. The mechanisms by which recombination takes place have been studied extensively in the laboratory but much remains to be understood concerning how, when and where recombination takes place within natural populations of bacteria and how it helps them to adapt to new environments. ClonalOrigin performs a comparative analysis of the sequences of a sample of bacterial genomes in order to reconstruct the recombination events that have taken place in their ancestry.
From Debian's description of the clonalorigin package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libgsl28libstdc++6
Recommends
libxml-parserl-perl
Related apps
- plinkwhole-genome association analysis toolsetCommand line
- laganhighly parametrizable pairwise global genome sequence alignerCommand line
- sim4dbbatch spliced alignment of cDNA sequences to a target genomeCommand line
- tigr-glimmerGene detection in archea and bacteriaCommand line
- last-aligngenome-scale comparison of biological sequencesCommand line
- seqan-appsC++ library for the analysis of biological sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the clonalorigin package, under that package's license.
- Description: Debian's description of the clonalorigin package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.