damapper
long read to reference genome mapping tool
Command lineScience
Not tested on a device yet. What that means
Commands in the package
damapperHPC.damapper
About damapper
From Debian's package description
Recognised as the Damapper Library, this is a long read to reference genome mapping command line tool.
For a given reference database 'X' and read block 'Y', damapper produces the single file 'Y.X.las'. Each output file is sorted in order of the A-reads, and if a match is a chain of local alignments, then the LA's in the chain occur in increasing order of A-coordinates.
HPC.damapper writes a UNIX shell script to the standard output that maps every read in blocks <first> to <last> of database <reads> to a reference sequence <ref>. If <last> is missing then only the single block <first> is mapped, and if <first> is also missing then all blocks of the database are mapped.
This package contains the damapper and HPC.damapper binaries.
From Debian's description of the damapper package, under that package's license.
Dependencies
Depends on
libc6
Related apps
- ragoutReference-Assisted Genome Ordering UTilityCommand line
- maqmaps short fixed-length polymorphic DNA sequence reads to reference sequencesCommand line
- raconconsensus module for raw de novo DNA assembly of long uncorrected readsCommand line
- kmamapping genomic sequences to raw reads directly against redundant databasesCommand line
- dalignerlocal alignment discovery between long nucleotide sequencing readsCommand line
- svimStructural variant caller for long sequencing readsCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the damapper package, under that package's license.
- Description: Debian's description of the damapper package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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