flexbar
flexible barcode and adapter removal for sequencing platforms
Command lineScience
Not tested on a device yet. What that means
Commands in the package
flexbar
About flexbar
From Debian's package description
Flexbar preprocesses high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar increases mapping rates and improves genome and transcriptome assemblies. It supports next-generation sequencing data in fasta/q and csfasta/q format from Illumina, Roche 454, and the SOLiD platform.
Parameter names changed in Flexbar. Please review scripts. The recent months, default settings were optimised, several bugs were fixed and various improvements were made, e.g. revamped command-line interface, new trimming modes as well as lower time and memory requirements.
From Debian's description of the flexbar package, under that package's license.
Dependencies
Depends on
libbz2-1.0libc6libgcc-s1libstdc++6libtbb12zlib1g
Related apps
- pycoqccomputes metrics and generates Interactive QC plotsCommand line
- ecopcrestimate PCR barcode primers qualityCommand line
- trim-galoreautomate quality and adapter trimming for DNA sequencingCommand line
- ampliconnoiseremoval of noise from 454 sequenced PCR ampliconsCommand line
- porechopadapter trimmer for Oxford Nanopore readsCommand line
- adapterremovalrapid adapter trimming, identification, and read merging of gene sequencesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the flexbar package, under that package's license.
- Description: Debian's description of the flexbar package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.