igblast
Immunoglobulin and T cell receptor variable domain sequence analysis
Command lineScience
Not tested on a device yet. What that means
Commands in the package
edit_imgt_file.pligblastnigblastp
About igblast
From Debian's package description
IgBLAST allows users to view the matches to the germline V, D, and J genes, details at rearrangement junctions, the delineation of IG V domain framework regions, and complementarity determining regions. IgBLAST has the capability to analyse nucleotide and protein sequences, and can process sequences in batches. Furthermore, IgBLAST allows searches against the germline gene databases and other sequence databases simultaneously to minimize the chance of missing possibly the best matching germline V gene.
From Debian's description of the igblast package, under that package's license.
Dependencies
Depends on
libbz2-1.0libc6libgcc-s1libgomp1libncbi-vdb3libstdc++6libzstd1zlib1g
Recommends
Related apps
- ViTablesgraphical tool to browse and edit PyTables and HDF5 files
- hmmerprofile hidden Markov models for protein sequence analysisCommand line
- hmmer2profile hidden Markov models for protein sequence analysisCommand line
- embassy-domainatrixExtra EMBOSS commands to handle domain classification fileCommand line
- seergenomic sequence element (kmer) enrichment analysisCommand line
- vmatchlarge scale sequence analysis softwareCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the igblast package, under that package's license.
- Description: Debian's description of the igblast package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.