lighter
fast and memory-efficient sequencing error corrector
Command lineScience
Not tested on a device yet. What that means
Commands in the package
lighter
About lighter
From Debian's package description
Lighter is a fast, memory-efficient tool for correcting sequencing errors. Lighter avoids counting k-mers. Instead, it uses a pair of Bloom filters, one holding a sample of the input k-mers and the other holding k-mers likely to be correct. As long as the sampling fraction is adjusted in inverse proportion to the depth of sequencing, Bloom filter size can be held constant while maintaining near-constant accuracy. Lighter is parallelized, uses no secondary storage, and is both faster and more memory-efficient than competing approaches while achieving comparable accuracy.
From Debian's description of the lighter package, under that package's license.
Dependencies
Depends on
libc6libgcc-s1libstdc++6zlib1g
Related apps
- lokiMCMC linkage analysis on general pedigreesCommand line
- uc-echoerror correction algorithm designed for short-reads from NGSCommand line
- quorumQUality Optimized Reads of genomic sequencesCommand line
- centrifugerapid and memory-efficient system for classification of DNA sequencesCommand line
- bcalmde Bruijn compaction in low memoryCommand line
- dimblDistributed Memory Based LearnerCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the lighter package, under that package's license.
- Description: Debian's description of the lighter package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.