norsp
predictor of non-regular secondary structure
Command lineScience
Not tested on a device yet. What that means
Commands in the package
norsp
About norsp
From Debian's package description
NORSp is a publicly available predictor for disordered regions in proteins. Specifically, it predicts long regions with no regular secondary structure. Upon submission of a protein sequence, NORSp analyses the protein about its secondary structure, the presence of transmembrane helices and coiled-coils. It then returns the presence and position of disordered regions.
NORSp can be useful for biologists in several ways. For example, crystallographers can check whether their proteins contain NORS regions and make the decision about whether to proceed with the experiments since NORS proteins may be difficult to crystallise, as demonstrated by the their low occurrence in PDB. Biologists interested in protein structure-function relationship may also find it interesting to verify whether the protein-protein interaction sites coincide with NORS regions.
From Debian's description of the norsp package, under that package's license.
Dependencies
Depends on
Recommends
blast2librg-utils-perlprofphdncoils
Related apps
- infernalinference of RNA secondary structural alignmentsCommand line
- ncoilscoiled coil secondary structure predictionCommand line
- metastudentpredictor of Gene Ontology terms from protein sequenceCommand line
- dsspprotein secondary structure assignment based on 3D structureCommand line
- freecontactfast protein contact predictorCommand line
- profbvalpredictor of flexible/rigid protein residues from sequenceCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the norsp package, under that package's license.
- Description: Debian's description of the norsp package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
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