provean
Protein Variation Effect Analyzer
Command lineScience
Not tested on a device yet. What that means
Commands in the package
provean
About provean
From Debian's package description
PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein.
PROVEAN is useful for filtering sequence variants to identify nonsynonymous or indel variants that are predicted to be functionally important.
The performance of PROVEAN is comparable to popular tools such as SIFT or PolyPhen-2.
A fast computation approach to obtain pairwise sequence alignment scores enabled the generation of precomputed PROVEAN predictions for 20 single AA substitutions and a single AA deletion at every amino acid position of all protein sequences in human and mouse.
From Debian's description of the provean package, under that package's license.
Dependencies
Depends on
cd-hitncbi-blast+libc6libgcc-s1libstdc++6
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Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the provean package, under that package's license.
- Description: Debian's description of the provean package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.