optimir
Integrating genetic variations in miRNA alignment
Command lineScience
Not tested on a device yet. What that means
Commands in the package
optimir
About optimir
From Debian's package description
OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression.
OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, & study the impact of genetic variations on polymiRs' expression.
From Debian's description of the optimir package, under that package's license.
Dependencies
Depends on
Recommends
r-cran-gridextrar-cran-ggplot2
Related apps
- sra-toolkitutilities for the NCBI Sequence Read ArchiveCommand line
- cutesvcomprehensive discovery of structural variations of genomic sequencesCommand line
- mirtopannotate miRNAs with a standard mirna/isomir namingCommand line
- ipigintegrating PSMs into genome browser visualisationsCommand line
- proveanProtein Variation Effect AnalyzerCommand line
- eigensoftreduction of population bias for genetic analysesCommand line
Sources and licenses
- Name: the Debian package name.
- Summary: Debian's short description of the optimir package, under that package's license.
- Description: Debian's description of the optimir package, under that package's license.
- Versions and sizes: Debian's archive for ARM64, as on packages.debian.org.
- Popularity: Debian Popularity Contest counts.
More in About the catalog.